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Allium is a complicated genus that includes approximately 1000 species. Although its morphology is well studied, the taxonomic importance of many morphological traits, including floral traits, are poorly understood. Here, we examined and measured the floral characteristics of 87 accessions of 74 Allium taxa (belonging to 30 sections and nine subgenera) from Central to Eastern Asian countries. We then examined the taxonomic relationships between select flower characteristics and a phylogenetic tree based on ITS sequences. Our results confirm that floral morphology provides key taxonomic information to assess species delimitation in Allium. We found that perianth color is an important characteristic within the subg. Melanocrommyum, Polyprason, and Reticulatobulbosa. In subg. Allium, Cepa, and Rhizirideum, significant characteristics include ovary shape, perianth shape, and inner tepal apex. For species in subg. Angunium, the key taxonomic character is ovule number (only one ovule in per locule). In the subg. Allium, Cepa, Polyprason, and Reticulatobulbosa, which belong to the third evolutionary line of Allium, hood-like appendages occur in the ovary, although these do not occur in subg. Rhizirideum. Our results also indicated that the flower morphology of several species in some sections are not clearly distinguished, e.g., sect. Sacculiferum (subg. Cepa) and sect. Tenuissima (subg. Rhizirideum). This study provides detailed photographs and descriptions of floral characteristics and information on general distributions, habitats, and phenology of the studied taxa.
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In this study, we report the first complete plastome sequence of Datisca cannabina (GenBank acc. no. OP432690). The plastome had a typical quadripartite structure. Its size was 162,914 bp, consisting of 90,890 bp large single-copy (LSC), 19,296 bp small single-copy (SSC), and 26,364 bp inverted repeat (IR) regions. It contained 112 genes, including 78 protein-coding, 30 tRNA, and four rRNA genes. The infA gene was pseudogenized. Sixteen genes contain one intron and two genes (clpP and ycf3) had two introns. Our phylogenetic tree showed that D. cannabina formed a close relationship with Begoniaceae. However, further samples are required to determine the phylogenetic placement of Datiscaceae in Cucurbitales.
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Hedysarum is one of the largest genera in the Fabaceae family, mainly distributed in the Northern Hemisphere. Despite numerous molecular studies on the genus Hedysarum, there is still a lack of research aimed at defining the specific characteristics of the chloroplast genome (cp genome) of the genus. Furthermore, the interrelationships between sections in the genus based on the cp genome have not yet been studied. In this study, comprehensive analyses of the complete cp genomes of six Hedysarum species, corresponding to sections Multicaulia, Hedysarum, and Stracheya were conducted. The complete cp genomes of H. drobovii, H. flavescens, and H. lehmannianum were sequenced for this study. The cp genomes of six Hedysarum species showed high similarity with regard to genome size (except for H. taipeicum), gene sequences, and gene classes, as well as the lacking IR region. The whole cp genomes of the six species were found to contain 110 genes ranging from 121,176 bp to 126,738 bp in length, including 76 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. In addition, chloroplast SSRs and repetitive sequence regions were reported for each species. The six Hedysarum species shared 7 common SSRs and exhibited 14 unique SSRs. As well, three highly variable genes (clpP, accD, and atpF) with high Pi values were detected among protein-coding genes. Furthermore, we conducted phylogenetic analyses using the complete cp genomes and 76 protein-coding genes of 14 legume species, including the seven Hedysarum species. The results showed that the Hedysarum species form a monophyletic clade closely related to the genera Onobrychis and Alhagi. Furthermore, both of our phylogenetic reconstructions showed that section Stracheya is more closely related to section Hedysarum than to section Multicaulia. This study is the first comprehensive work to investigate the genome characteristics of the genus Hedysarum, which provides useful genetic information for further research on the genus, including evolutionary studies, phylogenetic relationships, population genetics, and species identification.
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A new species, Alliumsunhangiisp. nov., of the Middle Asiatic section Brevidentia F.O.Khass. & Iengal., (subgenusAllium, tribe Allioideae, Amaryllidaceae) is described. The species is a small plant from the Babatag Ridge in the Surkhandarya province of Uzbekistan. It is morphologically close to Alliumbrevidens Vved. in having initially dark violet filaments and three-cuspidate inner filaments, but differs by its small size and visibly unequal tepals as well as in the phylogenetic analysis based on ITS data.
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BACKGROUND AND AIMS: Macro- and micromorphology of seeds are diagnostic characteristics of importance in delimiting taxa in Allium (Amaryllidaceae). However, there is no consensus on the phylogenetic significance of testa cell characteristics and whether they reflect the different evolutionary levels recognized in Allium. METHODS: Seeds of 95 species (98 samples) representing 14 subgenera and 58 sections of Allium were examined using scanning electron microscopy (SEM) for such traits as periclinal wall surface area of ten testa cells, distance between testa cells (macromorphology), testa cell shapes, and arrangement and structure of anticlinal and periclinal walls (micromorphology). The data matrix was subjected to cladistic analysis. The produced phylogenetic tree was examined against the molecular tree obtained from publically available ITS sequences. KEY RESULTS: The periclinal wall surface area of ten testa cells and the distance between them, examined for the first time, were found useful for delimitation of species in Allium. Based on seed macro- and micromorphology, we present a taxonomic key and a hypothetical reconstruction of the migration routes during the early stages of evolution of Allium. CONCLUSIONS: The ancestors of Allium originated in an area bounded by the Caucasus, Central Asia and Iran. The seed testa morphology-based evolutionary state of a species is determined by two parameters: the shape of the periclinal walls and curvature of the anticlinal walls.
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Allium , Amaryllidaceae , Allium/genética , Microscopía Electrónica de Rastreo , Filogenia , Semillas/anatomía & histologíaRESUMEN
A new species, Oreocharis xieyongii T. Deng, D.G. Zhang & H. Sun, from Hunan Province, central China, is described. The combination of purple zygomorphic corolla with longer adaxial lobes and exserted stamens defines the species and discriminates it from all other current Oreocharis species. Morphological traits of the new species were compared to those of two similar species, Oreocharis xiangguiensis and O. rubrostriata. Phylogenetic analysis indicates that the new species is nested within the Oreocharis. Although only half of Oreocharis species were included in our study, evolutionary character analysis indicates that the ancestral states of the genus are likely the purple corolla, longer abaxial lip and inserted stamens. The longer adaxial lip is perhaps an apomorphy and only present in O. xieyongii and O. rubrostriata. Both morphological and molecular evidence suggest that O. xieyongii is a taxon new to science.
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New data on the phylogeny of four rare and endemic species of RanunculusL.sect.Ranunculastrum DC. of western Pamir-Alai, one of which is new to science, have been obtained. Ranunculustojibaevii sp. nov., from the Baysuntau Mountains, Western Hissar Range of Uzbekistan, is described. The new species is closely related to R.botschantzevii Ovcz., R.convexiusculus Kovalevsk. and R.alpigenus Kom., but differs in the blade of the radical leaves, which is rounded-reniform, segments 3-5-dissected, each 2-5-partite with elongated, rounded apical lobes. A phylogenetic analysis, using both the nuclear ribosomal internal transcribed spacer (ITS) and cpDNA (matK, rbcL, trnL-trnF), was informative in placing R.tojibaevii in context with its most closely-related species. Discussion on the geographic distribution, updated identification key, a detailed description, insights about its habitat and illustrations are provided.
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Allium sect. Cepa (Amaryllidaceae) comprises economically important plants, yet resolving the phylogenetic relationships within the section has been difficult as nuclear and chloroplast-based phylogenetic trees have been incongruent. Until now, phylogenetic studies of the section have been based on a few genes. In this study, we sequenced the complete chloroplast genome (plastomes) of four central Asian species of sect. Cepa: Allium oschaninii, A. praemixtum, A. pskemense and A. galanthum. Their chloroplast (cp) genomes included 114 unique genes of which 80 coded proteins. Seven protein-coding genes were highly variable and therefore promising for future phylogenetic and phylogeographic studies. Our plastome-based phylogenetic tree of Allium sect. Cepa revealed two separate clades: one comprising the central Asian species A. oschaninii, A. praemixtum, and A. pskemense, and another comprising A. galanthum, A. altaicum, and two cultivated species, A. cepa and A. fistulosum. These findings contradict previously reported phylogenies that relied on ITS and morphology. Possible explanations for this discrepancy are related to interspecific hybridization of species ancestral to A. galanthum and A. cepa followed by chloroplast capture; however, this is impossible to prove without additional data. Our results suggest that the central Asian Allium species did not play a role in the domestication of the common onion. Among the chloroplast genes, rpoC2 was identified as a gene of choice in further phylogeographical studies of the genus Allium.
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The complete chloroplast (cp) genome of Allium ferganicum was sequenced and annotated. The whole chloroplast genome consists of 153,126 bp with a typical quadripartite structure separated by a pair of 26,556 bp inverted repeat (IR) regions. The structure also includes the large single copy (LSC) - 81,982 bp and the small single copy (SSC) - 18,033 bp. The A. ferganicum chloroplast genome encodes 114 unique genes including 80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic trees for 35 plastomes genomes showed that A. ferganicum is closely related to A. sativum (garlic) and A. ampeloprasum (leek).
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The tribe Urticeae (Urticaceae), popularly known as Nettles, include 12 genera and ca. 200 species, constituting a diverse and cosmopolitan plant clade centered in tropical Asia, Africa, and South America. The global distribution of this clade makes it an excellent group to test hypotheses regarding the processes underlying tropical intercontinental disjunctions. More specifically, it allows us to test whether current distribution patterns resulted from recent transoceanic long-distance dispersal or ancient vicariance after boreotropical migration. We reconstructed the phylogeny of Nettles with the nuclear ITS and four plastid DNA regions (rbcL, trnL-F, matK and rpl14-rpl36) using Bayesian inference and maximum parsimony approaches. We inferred divergence times using a Bayesian uncorrelated lognormal relaxed molecular clock model and ancestral areas using the divergence-extinction-cladogenesis (DEC) model. Our results indicate a tropical Asian origin for the tribe during the late Paleocene. Migration events to Eurasia, South America and Africa occurred mainly during the Oligocene and Miocene. However, several long-distance dispersal events, including dispersals from Asia to Hawaii or Australasia, were inferred to have occurred from the Miocene onwards. The fleshy fruits and winged diaspores of several taxa are suited for long-distance dispersal.
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Dispersión de Semillas/fisiología , Urticaceae/fisiología , Asia , Teorema de Bayes , Filogenia , Filogeografía , Factores de Tiempo , Clima TropicalRESUMEN
A new species of Rosaceae from Central China, Prunus sunhangii D. G. Zhang & T. Deng, sp. nov. , is described and illustrated. The new species is placed in Prunus subgenus Cerasus by flower and fruit characteristics. It is most similar to Prunus cerasoides, but differs by having longitudinally 2-lobed apical petals, an acuminate leaf apex, 17-25 stamens, white petals, dark black drupes, brown hypanthium, and different phenology. The phylogenetic placement of this species was assessed based on morphological and molecular data. Molecular analysis (cpDNA + ITS) corroborated its placement in subgenus Cerasus, specifically Prunus section Serrula.
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Atropanthe sinensis Pascher (genus Atropanthe, family Solanaceae) is an endangered and medical important plant of China. Here, we report the complete plastome of A. sinensis, which was found to be 156,565 bp in length and encodes 114 annotated known unique genes, including 80 protein-coding genes, 4 ribosomal RNAs, and 30 transfer RNAs. Among them, 10 coding genes contained one intron each and two genes (clpP and ycf3) contained two introns each. The result of the phylogenetic analysis showed that genera Scopolia and Przewalskia were placed as sister groups to the Atropanthe.
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Eremurus robustus Regel (Eremurus, Asphodelaceae) is an ornamental plant and endemic to the Tien Shan and Pamir Alai mountains. In this study, the complete chloroplast genome of E. robustus was determined. The cp genome of E. robustus is 155,647 bp in length consisting of a large single-copy (LSC) region of 84,776 bp, a small single-copy (SSC) region of 17,786 bp, and a pair of identical inverted repeat regions (IRs) of 26,490 bp. The cp genome encodes 114 unique genes, including 80 protein-coding genes, 4 ribosomal RNAs and 30 transfer RNAs. Among them, ten coding genes contained one intron each and two genes (clpP and ycf3) contained two introns each. The phylogenetic analysis demonstrates a close relationship between genus Aloe with genus Eremurus.
